About Me

My photo
I am a former middle and high school science teacher pursuing a doctorate in Science Ed. at George Mason University, with a concentration in cognitive science and the evolution of cognition and learning. Postings on this blog represent my own views, not those of my employer or school. All writing displayed on this page is original work unless otherwise noted, and thus copyrighted.
Showing posts with label Biology. Show all posts
Showing posts with label Biology. Show all posts

29 October 2009

Chirality and Life

Marcelo Gleiser is, if not more intelligent, certainly more educated than I am. Thus I'm a but surprised to find such fundamental errors of thinking in his latest SEED article, here. Gleiser states, quite correctly, that all the proteins that make up life could, chemically, be right-oriented or left-oriented. He also cites his and colleagues' research that the early Earth appears to have contained molecules of both chiralities, and then asks why life only has left oriented molecules present. Marcelo, how is this not at least semi-obvious?
Let's start with a fundamental assumption; Life began once and only once on our planet, created from (insert correct answer here, we don't have it yet) to form self-replicating strands of nucleic acids and the proteins for which they code, somewhat like viruses or prions. This isn't that poor of an assumption, given the low probablity of spontaneous generation of life in the first place. It had to happen somewhere, given the numbers of stars and planets, and obviously it happened here or we couldn't write and read blogs written by graduate students of no current academic importance, but proposing it occured multiple times is a bit of a mathematical stretch. If you'd like, we can concede that life was unlikely to start more than once at a time, allowing the possibility that early life began several times sequentially, and that will not affect this dicussion at all. So, given that life occured once, or once to start, then the proteins incorporated in that first organism were likely of one chirality, given the simplicity of early life-like molecules and the coding for proteins written into whichever nucleic acid (likely RNA, from current evidence) was employed. That life had to replicate, using the available amino acids, proteins, and other molecules, and would replicate using the same structure without fundamental changes in the RNA (mutations). Molecules of the wrong chirality couldn't even interact chemically with those of early life, it'd be life trying to use the mirror image of a key. (Gleiser uses the mirror analogy to describe chiral molecules first, and it's apt, so I'm stealing it. Thanks Marcelo, you'll never likely see this, but I'm giving credit anyway)
Briefly, then, what we're seeing in the exclusivity of "left-handed" proteins is a what Dawkins calls a frozen accident, the vestige of the structure of our most distant ancestors and the necessary structures for their replication and survival, all the way down to us. There's no reason to suppose that life on other planets would necessarily follow this blueprint, and actually finding samples would be a requirement for making any statements of that kind.

Gleiser states it thusly:
If one traces life’s origins from its earliest stages, it’s hard to see how life began without molecular building blocks that were “chirally pure,” consisting solely of left- or right-handed molecules. Indeed, many models show how chirally pure amino acids may link to form precursors of the first protein-like chains. But what could have selected left-handed over right-handed amino acids? My group’s research suggests that early Earth’s violent environmental upheavals caused many episodes of chiral flip-flopping. The observed left-handedness of terrestrial amino acids is probably a local fluke.


Obviously we're not far apart on most of this view, it's the "it's hard to see how" statement that vexes me... his local fluke may be much more local than he believes, as in local to the particular location on the planet where life began.

24 March 2009

Natural arms race...

http://www.nytimes.com/2009/03/24/science/24armo.html?pagewanted=2&_r=1&hp?8dpc


This is a pretty cool article, although I'd like to see the actual paper.

Competition among males is often expressed in the form of elaborate weapons made of bone, horn or chitin. The weapons often start off small and then, under the pressure of competition, may evolve to attain gigantic proportions.


The underlying message being that bigger weapons are more intimidating, and therefor require less use. If, as a male, you spend less energy on defending your territory, you have more available for procreation. That, and injuries in the animal kingdom are often fatal, either directly or indirectly. It's best to avoid the fight in the first place.

Sexual selection was Darwin’s solution to a problem posed by the cumbersome weapons sported by many species, and the baroque ornaments developed by others. They seemed positive handicaps in the struggle for survival, and therefore contrary to his theory of natural selection. To account for these extravagances, Darwin proposed that both armaments and ornaments must have been shaped by competition for mates.

Darwin's concepts of sexual selection have been expanded upon, of course, but the basic idea holds true. Nothing with an energy cost fails to have a purpose... and realistically, that purpose should end up in a net energetic savings (active biological use of energy, not an entropic sense).

The article goes on to discuss the process of turning harmful weapons into display weapons, and the gradual adjustment from one to another. Many organisms (crabs are cited) have weapons that are used for both purposes. Humans, who's weapons are manufactured rather than genetically inbuilt (memetically coded weapons?)have only recently developed them for display rather than potential use. With the exception of their initial use at Hiroshima and Nagasaki, this is a solid explanation for the existence and lack of use of atomic arms. Humans would prefer to explain this by rationalising that "we knew what the outcome would be", which is understandable... if you fail to account for all the other horrible weapons we have developed for which we also know the outcomes (VX and Tabun Gas, anyone?). Once we're able to demonstrate that we have the ability to use such a display weapon, it is no longer necessary to put it to use... the people/organism with the best ritualised bluster wins (see Cuban Missle Crisis).